Table 2

Gene sets used in this analysis

Functional Pathway

Number of probe sets (corresponding # of known genes)

Reference

Cytogenetic sets (n = 319 sets)

15-500 (variable)

Subramanian et al. [5]

Functional sets (n = 522 sets)

15-500 (variable)

Subramanian et al. [5]

Oncogenic Pathways (5 sets)

Bild et al. [10]

Myc

164 (139)

Ras

228 (176)

E2F3

173 (147)

β-catenin

54 (42)

Src

46 (44)

Genomic Grade Index (1 set)

242 (183)

Sotiriou et al. [13]

76-gene prognostic signature (1 set)

76 (76)

Wang et al. [14]

Proliferation signature (1 set)

74 (44)

Whitfield et al. [15]

ABC transporter gene set (1 set)

61 (47)

Szakacs et al. [16]

Mutant-p53 signature (1 set)

25 (21)

Miller et al. [11]

ER-associated gene set (1 set)

200 (187)

Symmans et al. [12]

Tordai et al. Breast Cancer Research 2008 10:R37   doi:10.1186/bcr2088