Table 7

Top 20 gene sets enriched in grade III-associated stroma

Name

Size (number of genes)

Normalized enrichment score

False discovery rate q value

CELLULAR_DEFENSE_RESPONSE

52

2.31

0

IMMUNE_RESPONSE

220

2.17

0

IMMUNE_SYSTEM_PROCESS

312

2.16

0

T_CELL_ACTIVATION

42

2.14

0

LEUKOCYTE_ACTIVATION

67

2.09

0

JAK_STAT_CASCADE

28

2.05

6.82 × 10^-4

LYMPHOCYTE_ACTIVATION

59

2.05

5.85 × 10^-4

CELL_ACTIVATION

73

2.04

5.12 × 10^-4

M_PHASE_OF_MITOTIC_CELL_CYCLE

78

2.04

4.55 × 10^-4

RESPONSE_TO_VIRUS

48

2.04

5.12 × 10^-4

SPINDLE

39

2.03

5.60 × 10^-4

MITOSIS

75

2.02

5.99 × 10^-4

INTERLEUKIN_RECEPTOR_ACTIVITY

20

2.01

6.33 × 10^-4

POSITIVE_REGULATION_OF_IMMUNE_RESPONSE

28

2.00

7.35 × 10^-4

REGULATION_OF_IMMUNE_SYSTEM_PROCESS

66

1.99

7.54 × 10^-4

POSITIVE_REGULATION_OF_IMMUNE_SYSTEM_PROCESS

50

1.99

7.07 × 10^-4

RESPONSE_TO_BIOTIC_STIMULUS

112

1.99

6.65 × 10^-4

REGULATION_OF_I_KAPPAB_KINASE_NF_KAPPAB_CASCADE

89

1.99

6.85 × 10^-4

MRNA_PROCESSING_GO_0006397

67

1.97

0.001135

RESPONSE_TO_OTHER_ORGANISM

76

1.96

0.001282

Ma et al. Breast Cancer Research 2009 11:R7   doi:10.1186/bcr2222