Research article
The multiplex bead array approach to identifying serum biomarkers associated with breast cancer
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* Corresponding authors: Dong Y Noh dynoh@plaza.snu.ac.kr - Chul W Kim cwkim@snu.ac.kr
1 Department of Laboratory Medicine and Pathology, The Armed Forces Capital Hospital, 2nd street, Yul-dong, Bundnag-gu, Sungnam city, Gyeonggi-do, 434-040, Korea
2 Department of Surgery, Seoul National University College of Medicine, Daehak street, 28 Yeongeon-dong, Jongno-gu, Seoul 110-799, Korea
3 BioInfra Inc., Cancer Research Institute, Seoul National University College of Medicine, Daehak street, 28 Yeongeon-dong, Jongno-gu, Seoul 110-799, Korea
4 Department of Statistics, Seoul National University, Gwanak street, Gwanak-gu, Seoul 151-742, Korea
5 Department of Computer Engineering, College of Engineering, Korea Aerospace University, 100 Hanggondae street, Hwajeon-dong, Deogyangu, Goyang city, Gyeonggi-do, 412-791, Korea
6 Department of Pathology, Cancer Research Institute, Tumor Immunity Medical Research Center, Seoul National University College of Medicine, Daehak street, 28 Yeongeon-dong, Jongno-gu, Seoul 110-799, Korea
Breast Cancer Research 2009, 11:R22 doi:10.1186/bcr2247
Published: 28 April 2009Abstract
Introduction
Breast cancer is the most common type of cancer seen in women in western countries. Thus, diagnostic modalities sensitive to early-stage breast cancer are needed. Antibody-based array platforms of a data-driven type, which are expected to facilitate more rapid and sensitive detection of novel biomarkers, have emerged as a direct, rapid means for profiling cancer-specific signatures using small samples. In line with this concept, our group constructed an antibody bead array panel for 35 analytes that were selected during the discovery step. This study was aimed at testing the performance of this 35-plex array panel in profiling signatures specific for primary non-metastatic breast cancer and validating its diagnostic utility in this independent population.
Methods
Thirty-five analytes were selected from more than 50 markers through screening steps using a serum bank consisting of 4,500 samples from various types of cancer. An antibody-bead array of 35 markers was constructed using the Luminex™ bead array platform. A study population consisting of 98 breast cancer patients and 96 normal subjects was analysed using this panel. Multivariate classification algorithms were used to find discriminating biomarkers and validated with another independent population of 90 breast cancer and 79 healthy controls.
Results
Serum concentrations of epidermal growth factor, soluble CD40-ligand and proapolipoprotein A1 were increased in breast cancer patients. High-molecular-weight-kininogen, apolipoprotein A1, soluble vascular cell adhesion molecule-1, plasminogen activator inhibitor-1, vitamin-D binding protein and vitronectin were decreased in the cancer group. Multivariate classification algorithms distinguished breast cancer patients from the normal population with high accuracy (91.8% with random forest, 91.5% with support vector machine, 87.6% with linear discriminant analysis). Combinatorial markers also detected breast cancer at an early stage with greater sensitivity.
Conclusions
The current study demonstrated the usefulness of the antibody-bead array approach in finding signatures specific for primary non-metastatic breast cancer and illustrated the potential for early, high sensitivity detection of breast cancer. Further validation is required before array-based technology is used routinely for early detection of breast cancer.