Table 1

Breast-specific serial analysis of gene expression (SAGE) libraries
Histology
 Library name
 Tag count
 Unique tags
Normal breast tissue
     Normal 1
 SAGE breast normal AP Br Na
 37,419
 15,886
     Normal 2
 SAGE breast normal epithelium AP 1a
 49,021
 18,276
     Normal 3
 SAGE breast normal organoid Ba
 58,326
 19,602
     Normal 4
 SAGE breast normal organoid B2a
 59,481
 20,391
Ductal carcinoma in situ
     DCIS 1
 SAGE breast carcinoma MD DCISa
 42,174
 14,237
     DCIS 2
 SAGE breast carcinoma AP DCIS 3a
 57,924
 31,142
     DCIS 3
 SAGE breast carcinoma B DCIS 4a
 60,699
 20,224
     DCIS 4
 SAGE breast carcinoma B DCIS 5a
 43,118
 15,935
     DCIS 5
 SAGE breast carcinoma epithelium AP DCIS 6a
 73,409
 30,256
     DCIS 6
 SAGE breast carcinoma B BWHT18a
 50,879
 19,182
     DCIS 7
 MDACC 22Tb
 102,533
 33,305
Invasive ductal carcinoma
     IDC 1
 MDACC 09Tb
 91,647
 37,863
     IDC 2
 MDACC 14Tb
 100,255
 26,422
     IDC 3
 MDACC 15Tb
 90,198
 27,653
     IDC 4
 MDACC 17Tb
 100,386
 29,300
     IDC 5
 MDACC 18Tb
 101,543
 29,936
     IDC 6
 MDACC 19Tb
 100,334
 28,498
     IDC 7
 MDACC 20Tb
 100,047
 28,903
     IDC 8
 MDACC 21Tb
 103,825
 31,412
     IDC 9
 MDACC 24Tb
 99,546
 30,363
     IDC 10
 MDACC 25Tb
 100,501
 30,778
     IDC 11
 SAGE breast carcinoma B IDC 3a
 68,937
 22,732
     IDC 12
 SAGE breast carcinoma B IDC 5a
 60,476
 20,457
Total
 23 breast libraries
 1,752,678

a Libraries available in public databases. b Libraries generated in our laboratory.

Abba et al. Breast Cancer Res 2004 6:R499   doi:10.1186/bcr899