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Most frequent differentially expressed genes between ductal carcinoma in situ and invasive ductal carcinoma (IDC) |
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| Tag |
Gene |
Description |
Locus link |
Fold change |
P value |
|
|
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| IDC overexpressed genes |
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| TGGAAATGAC |
COL1A1 |
Collagen type I, alpha 1 |
1277 |
315.4 |
0.0054 |
| ATGTGAAGAG |
SPARC |
Secreted protein, cysteine-rich (osteonectin) |
6678 |
286.8 |
0.0003 |
| TTTGGTTTTC |
COL1A2 |
Collagen type I, alpha 2 |
1278 |
210.9 |
0.0084 |
| TTGCTGACTT |
COL6A1 |
Collagen type VI, alpha 1 |
1291 |
73.9 |
0.0023 |
| TTATGTTTAA |
LUM |
Lumican |
4060 |
56.7 |
0.0011 |
| TTGGAGATCT |
NDUFA4 |
NADH dehydrogenase (ubiquinone) |
4697 |
56.4 |
0.0065 |
| CCACAGGGGA |
COL3A1 |
Collagen type III, alpha 1 |
1281 |
49.4 |
0.0056 |
| ATCTTGTTAC |
FN1 |
Fibronectin 1 |
2335 |
44.3 |
0.0031 |
| TTGTAATCGT |
OAZ1 |
Ornithine decarboxylase antizyme 1 |
4946 |
38.6 |
0.0038 |
| TGTAATCAAT |
HNRPA1 |
Heterogeneous nuclear ribonucleoprotein A1 |
3178 |
38.2 |
0.0039 |
| GGAAGCTAAG |
OSF-2 |
Osteoblast specific factor 2 (fasciclin I-like) |
10631 |
36.3 |
0.0005 |
| ACCTGTATCC |
IFITM3 |
Interferon induced transmembrane protein 3 |
10410 |
34.3 |
0.0021 |
| GGAAATGTCA |
MMP2 |
Matrix metalloproteinase 2 |
4313 |
29.1 |
0.0008 |
| TGCACTTCAA |
SPARCL1 |
SPARC-like 1 (mast9, hevin) |
8404 |
21.7 |
0.0050 |
| GGAACTTTTA |
SULF2 |
Sulfatase 2 |
55959 |
19.8 |
0.0017 |
| CTGTTAGTGT |
MDH1 |
Malate dehydrogenase 1 |
4190 |
18.5 |
0.0026 |
| TATGAATGCT |
CSPG2 |
Chondroitin sulfate proteoglycan 2 (versican) |
1462 |
18.2 |
0.0017 |
| TCCAAATCGA |
VIM |
Vimentin |
7431 |
17.7 |
0.0014 |
| TGTAGTTTGA |
SKP1A |
S-phase kinase-associated protein 1A |
6500 |
16.9 |
0.0013 |
| TAATAAACAG |
ASAH1 |
n-Acylsphimgosine amidohydrolase |
427 |
16.8 |
0.0085 |
| GCCTCCTCCC |
EIF3k |
Eukaryotic translation initiation factor 3 |
27335 |
16.8 |
0.0098 |
| GAAACAAGAT |
PGK1 |
Phosphoglycerate kinase 1 |
5230 |
15.8 |
0.0006 |
| TGCTTTGGGA |
TTC11 |
tetratricopeptide repeat domain 11 |
51024 |
15.8 |
0.0018 |
| GAAATCAAAA |
SIGLEC5 |
Sialic acid binding Ig-like lectin 5 |
8778 |
14.7 |
0.0098 |
| ATGTAGTAGT |
HNRPD |
Heterogeneous nuclear ribonucleoprotein D |
3184 |
14.7 |
0.0025 |
| GACCACCTTT |
MFAP2 |
Microfibrillar-associated protein 2 |
4237 |
14.4 |
0.0000 |
| ACTTATTATG |
DCN |
Decorin |
1634 |
13.9 |
0.0007 |
| TCTCTACCCA |
APLP2 |
Amyloid beta (A4) precursor-like protein 2 |
334 |
13.7 |
0.0076 |
| TGCAATATGC |
FBN1 |
Fibrillin 1 |
2200 |
13.5 |
0.0037 |
| ATTTCTTCAA |
SFRP2 |
Secreted frizzled-related protein 2 |
6423 |
13.4 |
0.0030 |
| ATAAAAAGAA |
CTSK |
Cathepsin K (pycnodysostosis) |
1513 |
13.0 |
0.0003 |
| GTACATTGTA |
MGC15737 |
Hypothetical protein |
85012 |
12.6 |
0.0011 |
| TGATGTTTGA |
DAZAP2 |
DAZ associated protein 2 |
9802 |
12.5 |
0.0013 |
| TCCGTGGTTG |
BASP1 |
Membrane attached signal protein 1 |
10409 |
12.1 |
0.0055 |
| ACTGCTTTAC |
DKFZp564I1922 |
Adlican |
25878 |
12.0 |
0.0086 |
| TCTGCAATGA |
TINP1 |
Trasnforming growth factor beta-inducible nuclear protein 1 |
10412 |
12.0 |
0.0033 |
| GTTTCTTCCC |
SELH |
Selenoprotein H |
2880636 |
11.8 |
0.0037 |
| AATATGCTTT |
ATP6V1E1 |
ATPase |
529 |
11.6 |
0.0009 |
| TTATGGATCT |
SPON2 |
Spondin 2, extracellular matrix protein |
10417 |
11.3 |
0.0003 |
| AAAATAAAGA |
APEX1 |
Nuclease, multifunctional DNA repair enzyme |
328 |
11.3 |
0.0099 |
| TGTGTGTTTG |
HIF0 |
H1 histone family |
3005 |
11.2 |
0.0029 |
| TATGTTTCAG |
PTPN12 |
Protein tyrosine phosphatase |
5782 |
11.1 |
0.0003 |
| ACCAAAGCCC |
MGC9651 |
Hypothetical protein |
114932 |
10.6 |
0.0075 |
| CAAGGATCTA |
NICE-3 |
NICE-3 protein |
25912 |
10.5 |
0.0057 |
| GACGTCTTAA |
PSMA4 |
Proteasome subunit, alpha type |
5685 |
10.3 |
0.0038 |
| CAGATAACAT |
TOMM20 |
Translocase |
9804 |
10.1 |
0.0064 |
| AACTCTTGAA |
EIF3S3 |
Eukaryotic translation initiation factor 3 |
8667 |
10.0 |
0.0047 |
| TTCTTGGTGT |
TRPS1 |
Trichorhinophalangeal syndrome I |
7227 |
9.9 |
0.0042 |
| TGCCTTAGTA |
DNAJC1 |
DNAJ homolog |
64215 |
9.8 |
0.0040 |
| AGACAAGCTG |
SFRS5 |
Splicing factor |
6430 |
9.4 |
0.0015 |
| ACAAGAATTG |
SYPL |
Synaptophysin-like protein |
6856 |
9.3 |
0.0027 |
| TACATCCGAA |
MTPN |
Myotrophin |
136319 |
9.3 |
0.0013 |
Abba et al. Breast Cancer Res 2004 6:R499 doi:10.1186/bcr899 |
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