Research article
Basal-like phenotype is not associated with patient survival in estrogen-receptor-negative breast cancers
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* Corresponding author: Mervi Jumppanen mervi.jumppanen@epshp.fi
- † Equal contributors
1 Department of Pathology, Seinäjoki Central Hospital, Hanneksenrinne 7, FIN-60220 Seinäjoki, Finland
2 Institute of Medical Technology, University and University Hospital of Tampere, Biokatu 6, FIN-33520 Tampere, Finland
3 Department of Oncology, Clinical Sciences, University of Lund, Klinikgatan 7, SE-221 85 Lund, Sweden
4 Department of Oncology, Tampere University Hospital, Teiskontie 35, FIN-33520 Tampere, Finland
5 Biomedical Informatics group, Department of Oncology, University of Helsinki, Haartmanninkatu 8, FIN-00290 Helsinki, Finland
6 Department of Theoretical Physics, Lund University, Sölvegatan 14A, SE-221 85 Lund, Sweden
Breast Cancer Research 2007, 9:R16 doi:10.1186/bcr1649
Published: 31 January 2007Additional files
Additional File 1:
A PDF file containing a heat map of 50 ER-negative tumors based on the top 500 gene set generated for the CK5/14-positive tumors. Yellow indicates the basal-like cluster and black the non-basal-like cluster.
Format: PDF Size: 928KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 2:
An Excel file containing the top 200 genes list generated for the immunohistochemically CK5/14-positive ER-negative breast cancers. The membrane association is defined.
Format: XLS Size: 75KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional File 3:
A PDF file containing a heat map of 50 ER-negative tumors based on the intrinsic gene set by Sorlie and colleagues [7]. Yellow indicates the basal-like cluster and black the non-basal-like cluster.
Format: PDF Size: 996KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 4:
A PDF file containing the results of a gene ontology annotation analysis of the top 1,000 basal genes.
Format: PDF Size: 92KB Download file
This file can be viewed with: Adobe Acrobat Reader